HTC :: Touch Disappearing Text Messages / Non-threading

I have an HTC Touch (not pro) flashed for Cricket using the OS modded by TooG. I use Microsoft MyPhone to backup all my data to my MyPhone account. My phone completely locked up and I ended up doing a hard re-set on my phone. I installed the MyPhone application (a copy I have stored in my MicroSD) and started the restore process. The data seems to have come back fine, with all my contacts, calendar, photos, and music being restored properly.

Problem #1) When I get a text message, I get the alert that I have a new text message and I see the first sentence of the message. To read the whole message I normally just tapped the alert and it would open the message. Now, I tap the message and it brings me to my Inbox, but no sign of the text message anywhere. I cannot find the message to read the message.

Problem #2) Text messages used to be stored in threads arranged according to date, and sender. On the main text message list, it would show newest messages on top, and when you opened the message, it would show the message history from that person. But now, Incoming message are in an INBOX, and all sent messages are in a SENT box. To follow a conversation, you would need to go back and forth. VERY ANNOYING.